Transcript: lnc-MCUR1-4:1

Basic information

LNCipedia transcript ID: lnc-MCUR1-4:1 
LNCipedia gene ID: lnc-MCUR1-4
Ensembl Gene ID: ENSG00000237346
Ensembl Transcript ID: ENST00000456440
Location (hg19): chr6:14391462-14393519
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 489 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00011457; ENST00000456440; ENST00000456440.1; RP3-448I9.2-001; OTTHUMT00000039920.1; NONHSAT107837
Alternative gene names: XLOC_005616; linc-CCDC90A-3; ENSG00000237346; RP3-448I9.2; ENSG00000237346.1; OTTHUMG00000014287.1; AL080313.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -164.3424 non-coding 
CPAT coding probability 1.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MCUR1-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CCDC90A-4:1
3.1 lnc-CCDC90A-4:1
4.0 lnc-CCDC90A-4:1
4.1 lnc-CCDC90A-4:1
5.0 lnc-CCDC90A-4:1
5.1 lnc-ECI2-275:1
5.2 lnc-MCUR1-4:1