Transcript: lnc-MDGA1-2:1

Basic information

LNCipedia transcript ID: lnc-MDGA1-2:1 
LNCipedia gene ID: lnc-MDGA1-2
Location (hg19): chr6:38141449-38145069
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 319 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000413235.1; RP3-322I12.2-001; OTTHUMT00000040428.1; NONHSAT112306
Alternative gene names: ENSG00000225874.1; RP3-322I12.2; OTTHUMG00000014630.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -129.3174 non-coding 
CPAT coding probability 1.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MDGA1-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MDGA1-2:1
4.0 lnc-MDGA1-2:1
4.1 lnc-MDGA1-2:1
5.0 lnc-MDGA1-2:1
5.1 lnc-CPNE5-35:1
5.2 lnc-MDGA1-2:1