Transcript: lnc-MED10-8:2

Basic information

LNCipedia transcript ID: lnc-MED10-8:2 
LNCipedia gene ID: lnc-MED10-8
Ensembl Gene ID: ENSG00000251426
Ensembl Transcript ID: ENST00000502893
Location (hg19): chr5:5047093-5047567
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 332 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009592; ENST00000502893; ENST00000502893.1; CTD-2247C11.4-002; OTTHUMT00000365650.1; NONHSAT100160
Alternative gene names: XLOC_004718; linc-IRX2-13; ENSG00000251426; CTD-2247C11.4; ENSG00000251426.1; OTTHUMG00000161659.2; AC010451.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -119.1904 non-coding 
CPAT coding probability 0.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MED10-8:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MED10-5:2
3.1 lnc-MED10-8:2
4.0 lnc-MED10-8:2
4.1 lnc-MED10-8:2
5.0 lnc-MED10-8:2
5.1 lnc-IRX2-50:2
5.2 lnc-MED10-8:2