Transcript: lnc-MEF2C-1:1

Basic information

LNCipedia transcript ID: lnc-MEF2C-1:1 
LNCipedia gene ID: lnc-MEF2C-1
Ensembl Gene ID: ENSG00000250377
Ensembl Transcript ID: ENST00000508719
Location (hg19): chr5:87988462-87989789
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 676 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009720; ENST00000508719; ENST00000508719.1; CTC-467M3.3-001; OTTHUMT00000369798.1; NONHSAT102684
Alternative gene names: XLOC_004918; linc-TMEM161B-2; ENSG00000250377; CTC-467M3.3; ENSG00000250377.1; OTTHUMG00000162631.1; AC008525.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -554.2301 non-coding 
CPAT coding probability 3.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MEF2C-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MEF2C-1:1
3.1 lnc-MEF2C-1:1
4.0 lnc-MEF2C-1:1
4.1 lnc-MEF2C-1:1
5.0 lnc-MEF2C-1:1
5.1 lnc-ANKRD34B-154:2
5.2 lnc-MEF2C-1:1