Transcript: lnc-MEIS2-1:3

Basic information

LNCipedia transcript ID: lnc-MEIS2-1:3 
LNCipedia gene ID: lnc-MEIS2-1
RefSeq ID: NR_024264
Location (hg19): chr15:37156644-37178734
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2987 bp
Exons: 7
Sources: Broad Institute; NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00023196; NONHSAT041671; NR_024264; NR_024264.1
Alternative gene names: XLOC_011427; linc-ATPBD4-2; LOC145845


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -134.314 non-coding 
CPAT coding probability 4.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MEIS2-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MEIS2-1:1
3.1 lnc-MEIS2-1:3
4.0 lnc-MEIS2-1:3
4.1 lnc-MEIS2-1:3
5.0 lnc-MEIS2-1:3
5.1 lnc-NANOGP8-16:6
5.2 lnc-MEIS2-1:3