Transcript: lnc-METTL16-1:4

Basic information

LNCipedia transcript ID: lnc-METTL16-1:4 
LNCipedia gene ID: lnc-METTL16-1
Location (hg19): chr17:2310307-2319143
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 490 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000381977.3; RP1-59D14.3-002; OTTHUMT00000437649.1; NONHSAT144956
Alternative gene names: ENSG00000205821.3; RP1-59D14.3; OTTHUMG00000177563.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -677.9806 non-coding 
CPAT coding probability 2.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-METTL16-1:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC006435.1-1:2
4.0 lnc-AC006435.1-1:2
4.1 lnc-AC006435.1-1:2
5.0 lnc-AC006435.1-1:2
5.1 lnc-RPH3AL-69:3
5.2 lnc-METTL16-1:4