Transcript: lnc-MFAP3-1:10

Basic information

LNCipedia transcript ID: lnc-MFAP3-1:10 
LNCipedia gene ID: lnc-MFAP3-1
Location (hg19): chr5:153476682-153537442
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 241 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00010816; NONHSAT104683
Alternative gene names: XLOC_004609; linc-GALNT10


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -89.725 non-coding 
CPAT coding probability 1.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MFAP3-1:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GALNT10-1:2
3.1 lnc-GALNT10-1:2
4.0 lnc-MFAP3-1:10
4.1 lnc-MFAP3-1:10
5.0 lnc-MFAP3-1:10
5.1 lnc-SAP30L-8:9
5.2 lnc-MFAP3-1:10