Transcript: lnc-MFAP3-1:9

Basic information

LNCipedia transcript ID: lnc-MFAP3-1:9 
LNCipedia gene ID: lnc-MFAP3-1
Location (hg19): chr5:153476606-153514439
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 261 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00010815; NONHSAT104682
Alternative gene names: XLOC_004609; linc-GALNT10


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -479.506 non-coding 
CPAT coding probability 4.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MFAP3-1:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GALNT10-1:1
3.1 lnc-GALNT10-1:1
4.0 lnc-MFAP3-1:9
4.1 lnc-MFAP3-1:9
5.0 lnc-MFAP3-1:9
5.1 lnc-SAP30L-8:8
5.2 lnc-MFAP3-1:9