Transcript: lnc-MFHAS1-2:1

Basic information

LNCipedia transcript ID: lnc-MFHAS1-2:1 
LNCipedia gene ID: lnc-MFHAS1-2
Location (hg19): chr8:8844846-8846067
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 251 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00014926; NONHSAT124901
Alternative gene names: XLOC_006997; linc-MFHAS1-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -219.0904 non-coding 
CPAT coding probability 10.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MFHAS1-2:1 no no no no

Available literature

  1. Giallourakis (2013), Genome-wide analysis of immune system genes by expressed sequence Tag profiling., J. Immunol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MFHAS1-2:1
3.1 lnc-MFHAS1-2:1
4.0 lnc-MFHAS1-2:1
4.1 lnc-MFHAS1-2:1
5.0 lnc-MFHAS1-2:1
5.1 lnc-PINX1-57:2
5.2 lnc-MFHAS1-2:1