Transcript: lnc-MFSD14B-3:1

Basic information

LNCipedia transcript ID: lnc-MFSD14B-3:1 
LNCipedia gene ID: lnc-MFSD14B-3
Ensembl Gene ID: ENSG00000232063
Ensembl Transcript ID: ENST00000454869
RefSeq ID: NR_033937
Location (hg19): chr9:97094758-97123230
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2162 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000454869; ENST00000454869.1; RP11-307E17.8-001; OTTHUMT00000053177.1; NONHSAT133310; NR_033937; NR_033937.1
Alternative gene names: ENSG00000232063; RP11-307E17.8; ENSG00000232063.1; OTTHUMG00000020262.1; AL691447.2; LOC100132077


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -6.9129 non-coding 
CPAT coding probability 1.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MFSD14B-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HIATL1-3:1
3.1 lnc-HIATL1-3:1
4.0 lnc-HIATL1-3:1
4.1 lnc-HIATL1-3:1
5.0 lnc-HIATL1-3:1
5.1 lnc-FAM120A-34:1
5.2 lnc-MFSD14B-3:1