Transcript: lnc-MFSD6-1:1

Basic information

LNCipedia transcript ID: lnc-MFSD6-1:1 
LNCipedia gene ID: lnc-MFSD6-1
Ensembl Gene ID: ENSG00000233654
Ensembl Transcript ID: ENST00000457407
Location (hg19): chr2:191399581-191432828
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 404 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000457407.1; AC093388.3-001; OTTHUMT00000335305.2; NONHSAT076089
Alternative gene names: ENSG00000233654.1; AC093388.3; OTTHUMG00000154455.2; AC108047.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -74.4244 non-coding 
CPAT coding probability 2.90% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MFSD6-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MFSD6-1:1
4.0 lnc-MFSD6-1:1
4.1 lnc-MFSD6-1:1
5.0 lnc-MFSD6-1:1
5.1 lnc-FAM171B-25:9
5.2 lnc-MFSD6-1:1