Transcript: lnc-MFSD8-5:1

Basic information

LNCipedia transcript ID: lnc-MFSD8-5:1 
LNCipedia gene ID: lnc-MFSD8-5
Ensembl Gene ID: ENSG00000250945
Ensembl Transcript ID: ENST00000506852
Location (hg19): chr4:127964585-127998917
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 648 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007821; ENST00000506852; ENST00000506852.1; RP11-810P8.1-001; OTTHUMT00000366022.1; NONHSAT098228
Alternative gene names: XLOC_004066; linc-ANKRD50-4; ENSG00000250945; RP11-810P8.1; ENSG00000250945.1; OTTHUMG00000161764.1; AC096773.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -122.3179 non-coding 
CPAT coding probability 1.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MFSD8-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MFSD8-4:1
3.1 lnc-MFSD8-5:1
4.0 lnc-MFSD8-5:1
4.1 lnc-MFSD8-5:1
5.0 lnc-MFSD8-5:1
5.1 lnc-TRPC3-23:1
5.2 lnc-MFSD8-5:1