Transcript: lnc-MGAM2-1:1

Basic information

LNCipedia transcript ID: lnc-MGAM2-1:1 
LNCipedia gene ID: lnc-MGAM2-1
Ensembl Gene ID: ENSG00000241657
Ensembl Transcript ID: ENST00000471935
Location (hg19): chr7:142197568-142198067
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 408 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000471935.1
Alternative gene names: ENSG00000241657.1; TRBV11-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -203.2565 non-coding 
CPAT coding probability 50.21% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-MGAM2-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-AC233282.2-1:3
4.1 lnc-AC233282.2-1:3
5.0 lnc-AC233282.2-1:3
5.1 lnc-ADCK2-24:1
5.2 lnc-MGAM2-1:1