Transcript: lnc-MGME1-1:2

Basic information

LNCipedia transcript ID: lnc-MGME1-1:2 
LNCipedia gene ID: lnc-MGME1-1
Location (hg19): chr20:17853283-17853698
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 325 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00028115; NONHSAT078773
Alternative gene names: XLOC_013469; linc-C20orf72


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -155.2407 non-coding 
CPAT coding probability 1.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MGME1-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C20orf72-1:1
3.1 lnc-C20orf72-1:1
4.0 lnc-C20orf72-1:1
4.1 lnc-C20orf72-1:1
5.0 lnc-C20orf72-1:1
5.1 lnc-CFAP61-33:2
5.2 lnc-MGME1-1:2