Transcript: lnc-MGMT-12:1

Basic information

LNCipedia transcript ID: lnc-MGMT-12:1 
LNCipedia gene ID: lnc-MGMT-12
Ensembl Gene ID: ENSG00000275327
Ensembl Transcript ID: ENST00000617939
Location (hg19): chr10:131635769-131636058
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 290 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000617939.1
Alternative gene names: ENSG00000275327.1; RP11-234G16.4; AL354950.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 45.998 non-coding 
CPAT coding probability 1.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-MGMT-12:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-MGMT-12:1
4.1 lnc-MGMT-12:1
5.0 lnc-MGMT-12:1
5.1 lnc-MGMT-12:1
5.2 lnc-MGMT-12:1