Transcript: lnc-MGST3-2:1

Basic information

LNCipedia transcript ID: lnc-MGST3-2:1 
LNCipedia gene ID: lnc-MGST3-2
Location (hg19): chr1:165667987-165679205
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1216 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000400982.2; RP11-466F5.5-001; OTTHUMT00000083897.1; NONHSAT007332
Alternative gene names: ENSG00000215838.3; RP11-466F5.5; OTTHUMG00000034675.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 15.7724 non-coding 
CPAT coding probability 0.92% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MGST3-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MGST3-2:1
4.0 lnc-MGST3-2:1
4.1 lnc-MGST3-2:1
5.0 lnc-MGST3-2:1
5.1 lnc-MAEL-29:1
5.2 lnc-MGST3-2:1