Transcript: lnc-MIB2-1:4

Basic information

LNCipedia transcript ID: lnc-MIB2-1:4 
LNCipedia gene ID: lnc-MIB2-1
Location (hg19): chr1:1535819-1545864
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2219 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; NONCODE v4
Alternative transcript names: ENST00000502203; TCONS_00000137; NONHSAT000338
Alternative gene names: ENSG00000245123; XLOC_000019; linc-MIB2; AL691432.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 14.4054 non-coding 
CPAT coding probability 13.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MIB2-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MIB2-1:3
3.1 lnc-MIB2-1:4
4.0 lnc-MIB2-1:4
4.1 lnc-MIB2-1:4
5.0 lnc-MIB2-1:4
5.1 lnc-VAMP3-91:4
5.2 lnc-MIB2-1:4