Transcript: lnc-MID1IP1-1:1

Basic information

LNCipedia transcript ID: lnc-MID1IP1-1:1 
LNCipedia gene ID: lnc-MID1IP1-1
Ensembl Gene ID: ENSG00000235806
Ensembl Transcript ID: ENST00000432359
Location (hg19): chrX:38629584-38658911
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1180 bp
Exons: 5
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00016977; ENST00000432359; ENST00000432359.1; RP4-646N3.1-001; OTTHUMT00000060654.2; NONHSAT136655
Alternative gene names: XLOC_007954; linc-MID1IP1; ENSG00000235806; RP4-646N3.1; ENSG00000235806.1; OTTHUMG00000024091.2; AF241728.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -78.0263 non-coding 
CPAT coding probability 2.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MID1IP1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MID1IP1-1:1
3.1 lnc-MID1IP1-1:1
4.0 lnc-MID1IP1-1:1
4.1 lnc-MID1IP1-1:1
5.0 lnc-MID1IP1-1:1
5.1 lnc-CHST7-93:2
5.2 lnc-MID1IP1-1:1