Transcript: lnc-MMADHC-2:3

Basic information

LNCipedia transcript ID: lnc-MMADHC-2:3 
LNCipedia gene ID: lnc-MMADHC-2
Ensembl Gene ID: ENSG00000231079
Ensembl Transcript ID: ENST00000609886
Location (hg19): chr2:149643409-149646012
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 654 bp
Exons: 2
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000609886.1
Alternative gene names: ENSG00000231079.3; AC105402.4; ENSG00000231079.7; AC105402.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -155.6105 non-coding 
CPAT coding probability 43.96% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-MMADHC-2:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MMADHC-2:3
4.0 lnc-MMADHC-2:3
4.1 lnc-MMADHC-2:3
5.0 lnc-MMADHC-2:3
5.1 lnc-MMADHC-2:3
5.2 lnc-MMADHC-2:3