Transcript: lnc-MMD-1:2

Basic information

LNCipedia transcript ID: lnc-MMD-1:2 
LNCipedia gene ID: lnc-MMD-1
Location (hg19): chr17:53531407-53535811
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 263 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000572159.1; RP11-515E23.2-001; OTTHUMT00000439260.1; NONHSAT054813
Alternative gene names: ENSG00000262395.1; RP11-515E23.2; OTTHUMG00000177854.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 3.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MMD-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MMD-1:2
4.0 lnc-MMD-1:2
4.1 lnc-MMD-1:2
5.0 lnc-MMD-1:2
5.1 lnc-PTRH2-67:2
5.2 lnc-MMD-1:2