Transcript: lnc-MME-9:1

Basic information

LNCipedia transcript ID: lnc-MME-9:1 
LNCipedia gene ID: lnc-MME-9
Ensembl Gene ID: ENSG00000242790
Ensembl Transcript ID: ENST00000470024
Location (hg19): chr3:155008977-155011965
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 444 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00005632; ENST00000470024; ENST00000470024.1; RP11-451G4.3-001; OTTHUMT00000351106.1; NONHSAT092831
Alternative gene names: XLOC_002887; linc-GMPS-2; ENSG00000242790; RP11-451G4.3; ENSG00000242790.1; OTTHUMG00000158468.1; ; AC104831.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -237.3131 non-coding 
CPAT coding probability 1.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MME-9:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MME-2:1
3.1 lnc-MME-2:1
4.0 LINC01487:12
4.1 LINC01487:12
5.0 LINC01487:12
5.1 lnc-LEKR1-41:1
5.2 lnc-MME-9:1