Transcript: lnc-MMP23B-1:1

Basic information

LNCipedia transcript ID: lnc-MMP23B-1:1 
LNCipedia gene ID: lnc-MMP23B-1
Location (hg19): chr1:1656054-1663343
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1808 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; NONCODE v4
Alternative transcript names: ENST00000417099; NONHSAT000356
Alternative gene names: ENSG00000227775; RP1-283E3.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 23.3446 non-coding 
CPAT coding probability 24.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MMP23B-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MMP23B-1:1
3.1 lnc-MMP23B-1:1
4.0 lnc-MMP23B-1:1
4.1 lnc-MMP23B-1:1
5.0 lnc-MMP23B-1:1
5.1 lnc-VAMP3-86:2
5.2 lnc-MMP23B-1:1