Transcript: lnc-MMP24OS-73:11

Basic information

LNCipedia transcript ID: lnc-MMP24OS-73:11 
LNCipedia gene ID: lnc-MMP24OS-73
Location (hg19): chr20:33813403-33865906
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 634 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000456350.1; MT1P3-008; OTTHUMT00000315980.1; NONHSAT079480
Alternative gene names: ENSG00000126005.10; MT1P3; OTTHUMG00000032333.5; ENSG00000126005.11; MMP24-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -127.0824 non-coding 
CPAT coding probability 0.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MMP24OS-73:11 no no no no

Available literature

  1. Du (2013), Integrative genomic analyses reveal clinically relevant long noncoding RNAs in human cancer., Nat. Struct. Mol. Biol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-EIF6-1:8
4.0 MMP24-AS1:11
4.1 MMP24-AS1:11
5.0 MMP24-AS1:11
5.1 lnc-MMP24OS-1:11
5.2 lnc-MMP24OS-73:11