Transcript: lnc-MMP24OS-73:8

Basic information

LNCipedia transcript ID: lnc-MMP24OS-73:8 
LNCipedia gene ID: lnc-MMP24OS-73
Location (hg19): chr20:33804634-33865925
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 546 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000566203.1; MT1P3-011; OTTHUMT00000431481.1; NONHSAT079475
Alternative gene names: ENSG00000126005.10; MT1P3; OTTHUMG00000032333.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -77.8594 non-coding 
CPAT coding probability 3.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MMP24OS-73:8 no no no no

Available literature

  1. Du (2013), Integrative genomic analyses reveal clinically relevant long noncoding RNAs in human cancer., Nat. Struct. Mol. Biol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-EIF6-1:6
4.0 MMP24-AS1:8
4.1 MMP24-AS1:8
5.0 MMP24-AS1:8
5.1 lnc-MMP24OS-1:8
5.2 lnc-MMP24OS-73:8