Transcript: lnc-MMP28-4:2

Basic information

LNCipedia transcript ID: lnc-MMP28-4:2 
LNCipedia gene ID: lnc-MMP28-4
Location (hg19): chr17:34151781-34157147
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1507 bp
Exons: 2
Sources: Biogazelle lncRNA chip
Alternative transcript names: ENST00000449789
Alternative gene names: ENSG00000245021


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 26.3355 non-coding 
CPAT coding probability 0.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MMP28-4:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C17orf66-1:1
3.1 lnc-C17orf66-1:1
4.0 lnc-MMP28-3:2
4.1 lnc-MMP28-3:2
5.0 lnc-MMP28-3:2
5.1 lnc-SRCIN1-76:2
5.2 lnc-MMP28-4:2