Transcript: lnc-MPHOSPH8-14:1

Basic information

LNCipedia transcript ID: lnc-MPHOSPH8-14:1 
LNCipedia gene ID: lnc-MPHOSPH8-14
Location (hg19): chr13:19496029-19497905
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 746 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00021524; ENST00000422082; ENST00000422082.1; RP11-442J17.3-001; OTTHUMT00000043993.1; NONHSAT032228
Alternative gene names: XLOC_010287; linc-MPHOSPH8-5; ENSG00000231358; RP11-442J17.3; ENSG00000231358.1; OTTHUMG00000016470.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -49.3142 non-coding 
CPAT coding probability 8.50% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MPHOSPH8-14:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-408E5.4.1-4:1
3.1 lnc-RP11-408E5.4.1-5:1
4.0 lnc-RP11-408E5.4.1-5:1
4.1 lnc-RP11-408E5.4.1-5:1
5.0 lnc-RP11-408E5.4.1-5:1
5.1 lnc-GTF3A-155:1
5.2 lnc-MPHOSPH8-14:1