Transcript: lnc-MPHOSPH8-3:1

Basic information

LNCipedia transcript ID: lnc-MPHOSPH8-3:1 
LNCipedia gene ID: lnc-MPHOSPH8-3
Location (hg19): chr13:20651665-20653696
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 550 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000421863.1; ZMYM2-IT1-001; OTTHUMT00000044060.1; NONHSAT032303
Alternative gene names: ENSG00000230625.1; ZMYM2-IT1; OTTHUMG00000016511.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -50.0269 non-coding 
CPAT coding probability 2.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MPHOSPH8-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MPHOSPH8-3:1
4.0 lnc-MPHOSPH8-3:1
4.1 lnc-MPHOSPH8-3:1
5.0 lnc-MPHOSPH8-3:1
5.1 lnc-GTF3A-140:1
5.2 lnc-MPHOSPH8-3:1