Transcript: lnc-MPZ-1:1

Basic information

LNCipedia transcript ID: lnc-MPZ-1:1 
LNCipedia gene ID: lnc-MPZ-1
Location (hg19): chr1:161259151-161262269
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1093 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00001705; NONHSAT007151
Alternative gene names: XLOC_001065; linc-NR1I3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 9.1439 non-coding 
CPAT coding probability 2.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MPZ-1:1 no no no no

Available literature

  1. Ma (2015), Co‑expression of the carbamoyl‑phosphate synthase 1 gene and its long non‑coding RNA correlates with poor prognosis of patients with intrahepatic cholangiocarcinoma., Mol Med Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MPZ-1:1
3.1 lnc-MPZ-1:1
4.0 lnc-MPZ-1:1
4.1 lnc-MPZ-1:1
5.0 lnc-MPZ-1:1
5.1 lnc-SH2D1B-29:1
5.2 lnc-MPZ-1:1