Transcript: lnc-MRGPRX4-1:7

Basic information

LNCipedia transcript ID: lnc-MRGPRX4-1:7 
LNCipedia gene ID: lnc-MRGPRX4-1
Location (hg19): chr11:18230685-18233054
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2078 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00019074
Alternative gene names: XLOC_009080; linc-SAA1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -8.7565 non-coding 
CPAT coding probability 43.69% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-MRGPRX4-1:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MRGPRX4-1:3
3.1 lnc-MRGPRX4-1:3
4.0 lnc-RP11-113D6.10.1-1:4
4.1 lnc-RP11-113D6.10.1-1:4
5.0 lnc-RP11-113D6.10.1-1:4
5.1 lnc-KCNC1-6:3
5.2 lnc-MRGPRX4-1:7