Transcript: lnc-MRPL3-2:4

Basic information

LNCipedia transcript ID: lnc-MRPL3-2:4 
LNCipedia gene ID: lnc-MRPL3-2
Ensembl Gene ID: ENSG00000250608
Ensembl Transcript ID: ENST00000511699
Location (hg19): chr3:131046407-131049712
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2189 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000511699.1; RP11-933H2.4-002; OTTHUMT00000357025.3
Alternative gene names: ENSG00000250608.1; RP11-933H2.4; OTTHUMG00000159632.10; AC010210.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1.4645 non-coding 
CPAT coding probability 11.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MRPL3-2:4 no no no no

Available literature

  1. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MRPL3-2:4
4.0 lnc-MRPL3-2:4
4.1 lnc-MRPL3-2:4
5.0 lnc-MRPL3-2:4
5.1 lnc-H1FX-26:15
5.2 lnc-MRPL3-2:4