Transcript: lnc-MRPL33-1:9

Basic information

LNCipedia transcript ID: lnc-MRPL33-1:9 
LNCipedia gene ID: lnc-MRPL33-1
Location (hg19): chr2:27938798-27978571
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2270 bp
Exons: 5
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00003616; NONHSAT069795
Alternative gene names: XLOC_001406; linc-MRPL33


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -2.6003 non-coding 
CPAT coding probability 85.33% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-MRPL33-1:9 no no no no

Available literature

  1. Hou (2014), Long noncoding RNAs expression patterns associated with chemo response to cisplatin based chemotherapy in lung squamous cell carcinoma patients., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC4A1AP-1:7
3.1 lnc-SLC4A1AP-1:7
4.0 lnc-MRPL33-1:9
4.1 lnc-MRPL33-1:9
5.0 lnc-MRPL33-1:9
5.1 lnc-SNX17-22:8
5.2 lnc-MRPL33-1:9