Transcript: lnc-MRPL39-11:1

Basic information

LNCipedia transcript ID: lnc-MRPL39-11:1 
LNCipedia gene ID: lnc-MRPL39-11
Ensembl Gene ID: ENSG00000235564
Ensembl Transcript ID: ENST00000447405
Location (hg19): chr21:25333220-25339588
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 778 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00028889; ENST00000447405; ENST00000447405.1; AP000477.2-001; OTTHUMT00000171080.1; NONHSAT081436
Alternative gene names: XLOC_014028; linc-TMPRSS15-25; ENSG00000235564; AP000477.2; ENSG00000235564.1; OTTHUMG00000078275.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -51.1912 non-coding 
CPAT coding probability 1.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MRPL39-11:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MRPL39-10:1
3.1 lnc-MRPL39-11:1
4.0 lnc-MRPL39-11:1
4.1 lnc-MRPL39-11:1
5.0 lnc-MRPL39-11:1
5.1 lnc-N6AMT1-41:1
5.2 lnc-MRPL39-11:1