Transcript: lnc-MRPL39-3:1

Basic information

LNCipedia transcript ID: lnc-MRPL39-3:1 
LNCipedia gene ID: lnc-MRPL39-3
Ensembl Gene ID: ENSG00000229962
Ensembl Transcript ID: ENST00000419694
Location (hg19): chr21:26887785-26890650
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1046 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00028903; ENST00000419694; ENST00000419694.1; AP000221.1-001; OTTHUMT00000171193.1; NONHSAT081496
Alternative gene names: XLOC_014037; linc-TMPRSS15-10; ENSG00000229962; AP000221.1; ENSG00000229962.1; OTTHUMG00000078370.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -97.2199 non-coding 
CPAT coding probability 2.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MRPL39-3:1 no no no no

Available literature

  1. Zhou (2015), Genomic analysis of drug resistant pancreatic cancer cell line by combining long non-coding RNA and mRNA expression profling., Int J Clin Exp Pathol


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MRPL39-2:1
3.1 lnc-MRPL39-3:1
4.0 lnc-MRPL39-3:1
4.1 lnc-MRPL39-3:1
5.0 lnc-MRPL39-3:1
5.1 lnc-N6AMT1-24:2
5.2 lnc-MRPL39-3:1