Transcript: lnc-MRPL39-4:3

Basic information

LNCipedia transcript ID: lnc-MRPL39-4:3 
LNCipedia gene ID: lnc-MRPL39-4
Location (hg19): chr21:26825507-26839042
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 466 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00028901; ENST00000468736; ENST00000468736.1; AP000221.2-001; OTTHUMT00000355015.2; NONHSAT081489
Alternative gene names: XLOC_014036; linc-TMPRSS15-9; ENSG00000243740; AP000221.2; ENSG00000243740.1; OTTHUMG00000159378.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -407.0787 non-coding 
CPAT coding probability 2.92% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MRPL39-4:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MRPL39-3:2
3.1 lnc-MRPL39-4:3
4.0 lnc-MRPL39-4:3
4.1 lnc-MRPL39-4:3
5.0 lnc-MRPL39-4:3
5.1 lnc-N6AMT1-28:2
5.2 lnc-MRPL39-4:3