Transcript: lnc-MS4A4A-1:1

Basic information

LNCipedia transcript ID: lnc-MS4A4A-1:1 
LNCipedia gene ID: lnc-MS4A4A-1
Location (hg19): chr11:60085057-60085782
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 450 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00019307; NONHSAT021566
Alternative gene names: XLOC_009141; linc-MS4A6E


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -42.744 non-coding 
CPAT coding probability 6.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MS4A4A-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MS4A4A-1:1
3.1 lnc-MS4A4A-1:1
4.0 lnc-MS4A4A-1:1
4.1 lnc-MS4A4A-1:1
5.0 lnc-MS4A4A-1:1
5.1 lnc-MS4A8-8:1
5.2 lnc-MS4A4A-1:1