Transcript: lnc-MS4A8-17:10

Basic information

LNCipedia transcript ID: lnc-MS4A8-17:10 
LNCipedia gene ID: lnc-MS4A8-17
Location (hg19): chr11:60421191-60454622
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 470 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017
Alternative transcript names: ENST00000532591; ENST00000532591.1; LINC00301-004; OTTHUMT00000395604.1; NONHSAT021585
Alternative gene names: ENSG00000181995; NCRNA00301; ENSG00000181995.7; LINC00301; OTTHUMG00000141269.2; ENSG00000181995.11; MGC39681


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -33.0829 non-coding 
CPAT coding probability 1.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MS4A8-17:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MS4A8B-1:6
3.1 lnc-MS4A8B-1:6
4.0 LINC00301:10
4.1 LINC00301:10
5.0 LINC00301:10
5.1 lnc-MS4A8-1:10
5.2 lnc-MS4A8-17:10