Transcript: lnc-MS4A8-17:5

Basic information

LNCipedia transcript ID: lnc-MS4A8-17:5 
LNCipedia gene ID: lnc-MS4A8-17
RefSeq ID: NR_026946
Location (hg19): chr11:60383224-60454622
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 852 bp
Exons: 7
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000320202; ENST00000320202.4; LINC00301-001; OTTHUMT00000280451.1; NONHSAT021580; ENST00000320202.8; NR_026946.1
Alternative gene names: ENSG00000181995; NCRNA00301; ENSG00000181995.7; LINC00301; OTTHUMG00000141269.2; ENSG00000181995.11; MGC39681


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -136.1245 non-coding 
CPAT coding probability 4.94% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MS4A8-17:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MS4A8B-1:4
3.1 lnc-MS4A8B-1:3
4.0 LINC00301:5
4.1 LINC00301:5
5.0 LINC00301:5
5.1 lnc-MS4A8-1:5
5.2 lnc-MS4A8-17:5