Transcript: lnc-MSLN-2:1

Basic information

LNCipedia transcript ID: lnc-MSLN-2:1 
LNCipedia gene ID: lnc-MSLN-2
Location (hg19): chr16:791145-795374
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 4230 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000026184.1|ENCT00000154422.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 11.1117 non-coding 
CPAT coding probability 3.87% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MSLN-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-HAGHL-2:2
5.0 lnc-HAGHL-2:2
5.1 lnc-DNASE1L2-85:1
5.2 lnc-MSLN-2:1