Transcript: lnc-MST1-1:13

Basic information

LNCipedia transcript ID: lnc-MST1-1:13 
LNCipedia gene ID: lnc-MST1-1
Ensembl Gene ID: ENSG00000259970
Ensembl Transcript ID: ENST00000563780
Location (hg19): chr3:49721913-49722416
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 423 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000563780.1; AC099668.5-002; OTTHUMT00000346436.1; NONHSAT089721
Alternative gene names: ENSG00000259970.1; AC099668.5; OTTHUMG00000155919.2; AC099668.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -102.6546 non-coding 
CPAT coding probability 84.91% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-MST1-1:13 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AMIGO3-1:1
4.0 lnc-MST1-1:13
4.1 lnc-MST1-1:13
5.0 lnc-MST1-1:13
5.1 lnc-CAMKV-13:12
5.2 lnc-MST1-1:13