Transcript: lnc-MT1A-1:1

Basic information

LNCipedia transcript ID: lnc-MT1A-1:1 
LNCipedia gene ID: lnc-MT1A-1
Location (hg19): chr16:56677385-56678101
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 433 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00024856; NONHSAT142693
Alternative gene names: XLOC_011736; linc-MT1B


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -17.5505 non-coding 
CPAT coding probability 10.69% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MT1A-1:1 no no no no

Available literature

  1. Yu (2014), Tumor suppressor long non-coding RNA, MT1DP is negatively regulated by YAP and Runx2 to inhibit FoxA1 in liver cancer cells., Cell. Signal.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MT1A-1:2
3.1 lnc-MT1A-1:1
4.0 lnc-MT1A-1:1
4.1 lnc-MT1A-1:1
5.0 lnc-MT1A-1:1
5.1 lnc-ADGRG1-49:2
5.2 lnc-MT1A-1:1