Transcript: lnc-MTBP-1:1

Basic information

LNCipedia transcript ID: lnc-MTBP-1:1 
LNCipedia gene ID: lnc-MTBP-1
Ensembl Gene ID: ENSG00000248318
Ensembl Transcript ID: ENST00000509350
RefSeq ID: NR_125419
Location (hg19): chr8:121773493-121789072
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1973 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000509350.1; RP11-713M15.1-001; OTTHUMT00000381540.1; NONHSAT128456; NR_125419; NR_125419.1
Alternative gene names: ENSG00000248318.1; RP11-713M15.1; OTTHUMG00000165042.1; AC104958.1; LOC101927543


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 11.8744 non-coding 
CPAT coding probability 2.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MTBP-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MTBP-1:1
4.0 lnc-MTBP-1:1
4.1 lnc-MTBP-1:1
5.0 lnc-MTBP-1:1
5.1 lnc-NOV-11:1
5.2 lnc-MTBP-1:1