Transcript: lnc-MTFR2-2:11

Basic information

LNCipedia transcript ID: lnc-MTFR2-2:11 
LNCipedia gene ID: lnc-MTFR2-2
Ensembl Gene ID: ENSG00000237596
Ensembl Transcript ID: ENST00000419926
Location (hg19): chr6:136364990-136393965
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1570 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000419926.1; RP13-143G15.3-001; OTTHUMT00000042368.2; NONHSAT115109; ENST00000419926.3
Alternative gene names: ENSG00000227844.1; RP13-143G15.3; OTTHUMG00000015639.2; ENSG00000237596.6; RP13-143G15.4; AL138828.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -127.3575 non-coding 
CPAT coding probability 1.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MTFR2-2:11 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FAM54A-2:1
4.0 lnc-FAM54A-2:1
4.1 lnc-FAM54A-2:1
5.0 lnc-FAM54A-2:1
5.1 lnc-OLIG3-38:11
5.2 lnc-MTFR2-2:11