Transcript: lnc-MTR-1:2

Basic information

LNCipedia transcript ID: lnc-MTR-1:2 
LNCipedia gene ID: lnc-MTR-1
Location (hg19): chr1:237070344-237091621
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 7360 bp
Exons: 4
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00001335; NONHSAT010429
Alternative gene names: XLOC_000633; linc-RYR2-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 12.1788 non-coding 
CPAT coding probability 0.89% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MTR-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MTR-1:2
3.1 lnc-MTR-1:2
4.0 lnc-MTR-1:2
4.1 lnc-MTR-1:2
5.0 lnc-MTR-1:2
5.1 lnc-RYR2-1:5
5.2 lnc-MTR-1:2