Transcript: lnc-MTRR-1:1

Basic information

LNCipedia transcript ID: lnc-MTRR-1:1 
LNCipedia gene ID: lnc-MTRR-1
Ensembl Gene ID: ENSG00000251168
Ensembl Transcript ID: ENST00000511758
Location (hg19): chr5:7924405-7925511
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 295 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009345; ENST00000511758; ENST00000511758.1; CTD-2072I24.1-001; OTTHUMT00000366351.1; NONHSAT100275
Alternative gene names: XLOC_004282; linc-CCT5-10; ENSG00000251168; CTD-2072I24.1; ENSG00000251168.1; OTTHUMG00000161900.1; AC025174.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -191.6352 non-coding 
CPAT coding probability 1.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MTRR-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MTRR-1:1
3.1 lnc-MTRR-1:1
4.0 lnc-MTRR-1:1
4.1 lnc-MTRR-1:1
5.0 lnc-MTRR-1:1
5.1 lnc-CARD6-308:1
5.2 lnc-MTRR-1:1