Transcript: lnc-MTRR-4:3

Basic information

LNCipedia transcript ID: lnc-MTRR-4:3 
LNCipedia gene ID: lnc-MTRR-4
Ensembl Gene ID: ENSG00000249782
Ensembl Transcript ID: ENST00000505784
Location (hg19): chr5:8525291-8528791
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 335 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009347; ENST00000505784; ENST00000505784.1; RP11-417J1.1-001; OTTHUMT00000365858.1; NONHSAT100298
Alternative gene names: XLOC_004285; linc-CCT5-7; ENSG00000249782; RP11-417J1.1; ENSG00000249782.1; OTTHUMG00000161716.1; AC027328.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -541.0386 non-coding 
CPAT coding probability 13.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MTRR-4:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MTRR-4:3
3.1 lnc-MTRR-4:3
4.0 lnc-MTRR-4:3
4.1 lnc-MTRR-4:3
5.0 lnc-MTRR-4:3
5.1 lnc-CARD6-305:5
5.2 lnc-MTRR-4:3