Transcript: lnc-MTRR-6:1

Basic information

LNCipedia transcript ID: lnc-MTRR-6:1 
LNCipedia gene ID: lnc-MTRR-6
Ensembl Gene ID: ENSG00000250619
Ensembl Transcript ID: ENST00000506519
Location (hg19): chr5:9001886-9046052
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 805 bp
Exons: 6
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000506519.1; CTD-2215L10.1-001; OTTHUMT00000365996.1; NONHSAT100321
Alternative gene names: ENSG00000250619.1; CTD-2215L10.1; OTTHUMG00000161752.1; AC021088.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -138.5887 non-coding 
CPAT coding probability 1.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MTRR-6:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MTRR-6:1
4.0 lnc-MTRR-6:1
4.1 lnc-MTRR-6:1
5.0 lnc-MTRR-6:1
5.1 lnc-CARD6-298:1
5.2 lnc-MTRR-6:1