Transcript: lnc-MTUS2-9:1

Basic information

LNCipedia transcript ID: lnc-MTUS2-9:1 
LNCipedia gene ID: lnc-MTUS2-9
Location (hg19): chr13:30446750-30462542
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 913 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00021535; ENST00000453470; ENST00000453470.1; LINC00297-001; OTTHUMT00000303976.1; NONHSAT032753
Alternative gene names: XLOC_010331; linc-USPL1-6; ENSG00000224329; NCRNA00297; ENSG00000224329.1; LINC00297; OTTHUMG00000147351.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -178.6379 non-coding 
CPAT coding probability 0.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MTUS2-9:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-90M5.1.1-1:1
3.1 lnc-RP11-90M5.1.1-2:1
4.0 lnc-RP11-90M5.1.1-2:1
4.1 lnc-RP11-90M5.1.1-2:1
5.0 lnc-RP11-90M5.1.1-2:1
5.1 lnc-GTF3A-57:1
5.2 lnc-MTUS2-9:1