Transcript: lnc-MYCN-5:2

Basic information

LNCipedia transcript ID: lnc-MYCN-5:2 
LNCipedia gene ID: lnc-MYCN-5
Ensembl Gene ID: ENSG00000224400
Ensembl Transcript ID: ENST00000427950
Location (hg19): chr2:16536453-16613970
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 432 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00002836; ENST00000427950; ENST00000427950.1; AC010880.1-001; OTTHUMT00000323750.1; NONHSAT069333
Alternative gene names: XLOC_001368; linc-VSNL1-5; ENSG00000224400; AC010880.1; ENSG00000224400.1; OTTHUMG00000151752.1; ENSG00000224400.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -236.4979 non-coding 
CPAT coding probability 2.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MYCN-5:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MYCN-5:2
3.1 lnc-MYCN-5:2
4.0 lnc-MYCN-5:2
4.1 lnc-MYCN-5:2
5.0 lnc-MYCN-5:2
5.1 lnc-SNX17-131:2
5.2 lnc-MYCN-5:2