Transcript: lnc-MYEOV-2:1

Basic information

LNCipedia transcript ID: lnc-MYEOV-2:1 
LNCipedia gene ID: lnc-MYEOV-2
Ensembl Gene ID: ENSG00000259854
Ensembl Transcript ID: ENST00000562341
Location (hg19): chr11:69229075-69231600
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2424 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00019101; ENST00000562341.1; RP11-211G23.1-001; OTTHUMT00000430311.1; NONHSAT022602
Alternative gene names: XLOC_009192; linc-CCND1-3; ENSG00000259854.1; RP11-211G23.1; OTTHUMG00000175508.1; AP005233.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -23.1636 non-coding 
CPAT coding probability 35.86% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MYEOV-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MYEOV-2:1
3.1 lnc-MYEOV-2:1
4.0 lnc-MYEOV-2:1
4.1 lnc-MYEOV-2:1
5.0 lnc-MYEOV-2:1
5.1 lnc-TCIRG1-32:1
5.2 lnc-MYEOV-2:1