Transcript: lnc-MYO1D-1:3

Basic information

LNCipedia transcript ID: lnc-MYO1D-1:3 
LNCipedia gene ID: lnc-MYO1D-1
Ensembl Gene ID: ENSG00000279762
Ensembl Transcript ID: ENST00000623710
Location (hg19): chr17:30753777-30765778
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 583 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000623710.1
Alternative gene names: ENSG00000279762.3; RP11-227G15.12; AC005899.8


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -36.3574 non-coding 
CPAT coding probability 3.91% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MYO1D-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-MYO1D-1:3
4.1 lnc-MYO1D-1:3
5.0 lnc-MYO1D-1:3
5.1 lnc-SLC6A4-112:3
5.2 lnc-MYO1D-1:3